| Final | time | L | | 1. Cameron Van Der Burgh |  RSA | 1:00.19 | 4 | | 2. Yossif Elkamash |  EGY | 1:02.42 | 5 | | 3. Wassim Elloumi |  TUN | 1:02.79 | 7 | | 4. James Lawson |  ZIM | 1:03.11 | 6 | | 5. Ahmed Kamal | EGY | 1:03.33 | 3 | | 6. Alaric Basson | RSA | 1:03.73 | 2 | | 7. Malick Fall |  SEN | 1:04.42 | 8 | | 8. Abdelkader Mohamme Afane |  ALG | 1:04.50 | 1 |
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| Ranking | time | | 1. Cameron Van Der Burgh | RSA | 1:02.35 | | 2. Yossif Elkamash | EGY | 1:02.47 | | 3. Ahmed Kamal | EGY | 1:03.62 | | 4. James Lawson | ZIM | 1:03.76 | | 5. Alaric Basson | RSA | 1:04.26 | | 6. Wassim Elloumi | TUN | 1:04.42 | | 7. Abdelkader Mohammed Afane | ALG | 1:05.22 | | 8. Malick Fall | SEN | 1:05.53 | | eliminated | | 9. Ralph Goveia |  ZAM | 1:08.14 | | 10.Adama Thiaw Ndir | SEN | 1:08.93 | | 11.Tory Pragassa |  KEN | 1:09.25 | | 12.Mathew Shone | ZAM | 1:13.67 | | 13.Ahllan Bique |  MOZ | 1:15.62 | | 14.Edward Ilako | KEN | 1:17.08 | | 15.Abubaker Fadlalla Abbas |  SUD | 1:24.14 | | 16.Mark Turum Ofosu |  GHA | 1:28.04 | | 17.Brynich Mibansa |  COD | 1:30.37 |
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